error: package or namespace load failed for 'deseq2

so I would try to use BiocManager::install("XML"). [25] XVector_0.14.0 gridExtra_2.2.1 ggplot2_2.2.1 I tried to get a whole new environment and install an old version of Qiime but I still got a ton of conflicts and it didnt install. Installing packages directly into that location fixes the issue but is not desirable for all the reasons that people might want to use custom locations (e.g. I was assuming that to be the case. Are there tables of wastage rates for different fruit and veg? problem copying C:\Users\ASUS\Documents\R\win-library\3.6\00LOCK\xfun\libs\x64\xfun.dll to C:\Users\ASUS\Documents\R\win-library\3.6\xfun\libs\x64\xfun.dll: Permission denied, BiocManager::install("XML") [4] LCNUMERIC=C LCTIME=English_Malaysia.1252, attached base packages: Following successful installation of backports BiocManager::install ("DESeq2") will succeed under Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. (Factorization). [65] ape5.3 stringi1.4.6 Rcpp1.0.4 vctrs0.2.4 [28] digest_0.6.12 stringi_1.1.2 grid_3.3.2 It seems that lots of packages, most importantly data.table and lme4, were not properly compiled. Error: package or namespace load failed for ' tidyverse' in dyn.load (file, DLLpath = DLLpath, . Surly Straggler vs. other types of steel frames. Policy. [5] BiocManager1.30.10 GenomeInfoDbData1.2.2 cellranger1.1.0 pillar1.4.3 I tried installing DESeq2 using: but it run into a lot of errors (some missing packages for some dependency packages etc) Then I tried installing all the missing packages manually by downloading from CREN and installing the missing packages from .zip files. installing the source package GenomeInfoDbData, dyld: lazy symbol binding failed: Symbol not found: _utimensat [40] assertthat_0.1 rpart_4.1-10 nnet_7.3-12, It should not be necessary (R should take care of loading dependencies) but try installating data.table also. [37] Formula_1.2-1 cluster_2.0.5 Matrix_1.2-8 Looking for incompatible packages. Loading required package: GenomeInfoDb Why do academics stay as adjuncts for years rather than move around? By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. R version 3.6.3 (2020-02-29) Error: package or namespace load failed for 'DESeq2' in loadNamespace (j <- i [ [1L]], c (lib.loc, .libPaths ()), versionCheck = vI [ [j]]): there is no package called 'locfit' 0 cbravo11 0 @e0025e70 Last seen 10 months ago United States I installed DESeq2 using this code: I've uninstalled and reinstalled rlang (closing restarting RStudio in between each command) and am still encountering this error. The most common cause of this problem is trying to update a package while it is loaded in R (possibly in another process!). Just realize that I need to write the script "library("DESeq2")" before I proceed. R version 3.6.1 (2019-07-05) I installed the package successfully with conda, but Rstudio is apparently does not know about it. install.packages('', repo='http://nbcgib.uesc.br/mirrors/cran/'). In the Bioconductor realm, I would then check that package versions are consistent with the version of Bioconductor in use, and would ask more Bioconductor-related questions on the Bioconductor support site. This topic was automatically closed 21 days after the last reply. rev2023.3.3.43278. Error in loadNamespace (j <- i [ [1L]], c (lib.loc, .libPaths ()), versionCheck = vI [ [j]]) : there is no package called 'data.table' Error: package or namespace load failed for 'DESeq2' Tried installing the missing package: 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details, replacement repositories: Making statements based on opinion; back them up with references or personal experience. Error: package GenomeInfoDb could not be loaded. [26] xtable1.8-4 scales1.1.1 backports1.1.9 checkmate2.0.0 BiocManager1.30.10 It only takes a minute to sign up. Using indicator constraint with two variables, Does there exist a square root of Euler-Lagrange equations of a field? [45] Biostrings2.54.0 ade41.7-15 compiler3.6.3 rlang0.4.5 I'm having a similar error, but different package: library("DESeq2") Id also remove and re-install the version of QIIME 2 you tried to force install an older version of python, as you can tell, many things just broke. Bioinformatics Stack Exchange is a question and answer site for researchers, developers, students, teachers, and end users interested in bioinformatics. Assuming that your conda environment name is renv, try running this in the terminal: This should open up the Rstudio interface, like normal, but using everything defined in your renv environment. @artembus Sounds like it was a ton of work! Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05) Warning: cannot remove prior installation of package xfun Platform: x86_64-apple-darwin17.0 (64-bit) survival 3.1-12 3.2-3 TRUE, The downloaded binary packages are in I tried to download the "locfit" package but I can't find it anywhere. Policy. Sorry if I missed this, the question was quite long so I kind of skimmed, but I noticed that early on some of the packages were reported as requiring manual compilation from source. May be the version has problem How can I do ? [49] rhdf52.30.1 grid3.6.3 iterators1.0.12 biomformat1.14.0 Running under: Windows 10 x64 (build 18362), locale: What do I need to do to reproduce your problem? The issue for me was that Ubuntu's repositories are out of date for R, and I needed to add a new repository. Disconnect between goals and daily tasksIs it me, or the industry? ERROR: lazy loading failed for package Hmisc binary source needs_compilation Thanks! Hmm, but it says package XML successfully unpacked and MD5 sums checked it looks mostly like these have been successful? Making statements based on opinion; back them up with references or personal experience. there is no package called Hmisc. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. it would be good to hear any speculation you have of how this might have happened). [1] BiocInstaller_1.24.0 SummarizedExperiment_1.4.0 Styling contours by colour and by line thickness in QGIS. Copyright 2021 IRZU Intitut za raziskovanje zvonih umetnosti. I would suggest to install data.table, lme4 and all of the packages denoted in the 2 statements that said Packages which are only available in source form, and may need compilation of C/C++/Fortran: with pacman then re-run the Bioconductor installation of your target package. I again tried installing with biocLite but was met with errors so I changed the CRAN mirror. To add to this, I have also been using DESeq2 recently and ran into the same problem. [61] curl4.3 R62.4.1 dplyr0.8.5 permute0.9-5 Follow Up: struct sockaddr storage initialization by network format-string, Styling contours by colour and by line thickness in QGIS. March 1, 2023, 8:52pm By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. [4] colorspace_1.3-2 htmltools_0.3.5 base64enc_0.1-3 I tried following the instructions for 2019.7 as well and I am getting the same error. Error: package or namespace load failed for DESeq2 in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): Learn more about Stack Overflow the company, and our products. /private/var/folders/0t/8jm6lgqs0qj63rprpf9q_nfw0000gn/T/RtmpMNoZz3/downloaded_packages if (!require("BiocManager", quietly = TRUE)) One solution is to find all available packages. Is there a proper earth ground point in this switch box? I do not get why Rstudio does not see that I alrerady installed DESeq2 with conda. Given this is a Bioinformatics package, are you by any chance using Ubuntu or another linux distribution @RedRabbit? Press CTRL-C to abort. What is the output of. It could also be caused by a bad antivirus program that locks the dll which prevents it from being updated. ), update = TRUE, ask = FALSE), more details: BiocManager::valid()$toonew, BiocManager::valid()$outof_date, Warning message: I am also encountering a set of similar (although possible totally unrelated) issue with other packages, RStudio provides the following warning every startup, library(devtools) gives the following errors, Someone on twitter asked for the results of packageDescription("rlang"). [1] xfun0.17 splines3.6.1 lattice0.20-41 colorspace1.4-1 vctrs0.3.4 Solution To resolve this error, install the required package as a cluster-installed library. "After the incident", I started to be more careful not to trip over things. [19] htmlTable_1.9 Rcpp_0.12.9 acepack_1.4.1 Convince your IT department to relax the permissions for R packages It is working now. However, I am increasingly thinking it's something to do with how my IT has set permissions that are causing things to quietly fail. 0 packages out-of-date; 2 packages too new, BiocManager::install(c( Warning message: By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. You'll have an easier time if you install R/RStudio via conda and then install R packages the traditional way, inside R/RStudio. C:\Users\ASUS\AppData\Local\Temp\RtmpCiM0wL\downloaded_packages (I have the most recent version of tidyverse, RStudio, and R.) Error: package or namespace load failed for 'tidyverse': .onAttach failed in attachNamespace() for 'tidyverse', details: call: glue(str, .envir = .envir, .transformer = transformer . Error: package or namespace load failed for GenomeInfoDb in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): Asking for help, clarification, or responding to other answers. [7] survival_2.40-1 foreign_0.8-67 BiocParallel_1.8.1 I've previously written a blog post about this topic, and I can say from experience that installing R packages through conda can cause lots of headaches. [69] tidyselect_1.0.0. Author: Michael Love [aut, cre], Constantin Ahlmann-Eltze [ctb], Kwame Forbes [ctb], Simon Anders [aut, ctb], Wolfgang Huber [aut, ctb], RADIANT EU FP7 [fnd], NIH NHGRI [fnd], CZI [fnd], Maintainer: Michael Love . Installation instructions to use this Should I update the Bioconductor to latest version instead? Then I reinstalled R then Rstudio then RTools. data . [9] lattice0.20-40 glue1.3.2 digest0.6.25 XVector0.26.0 [1] parallel stats4 stats graphics grDevices utils datasets methods base, other attached packages: library ("DESeq2") Error: package or namespace load failed for 'DESeq2' in loadNamespace (j <- i [ [1L]], c (lib.loc, .libPaths ()), versionCheck = vI [ [j]]): there is no package called 'Hmisc' Installing Hmisc as suggested above did not solve the issue. [9] S4Vectors0.24.4 BiocGenerics0.32.0, loaded via a namespace (and not attached): [21] htmlwidgets1.5.1 latticeExtra0.6-29 knitr1.29 htmlTable2.1.0 Rcpp1.0.5 Surly Straggler vs. other types of steel frames, Linear regulator thermal information missing in datasheet. May I know is there any other approach I can try? I then launched the R application (from the finder, not RStudio) and installed BiocManager. [1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8, attached base packages: [1] stats4 parallel stats graphics grDevices utils locfit version 1.5-9.5 is in the repositories but depends on R (>= 4.1.0) When an R package depends on a newer package version, the required package is downloaded but not loaded. Hello, If I run install.packages(GenomeInfoDb) from R console, it is telling me that the package is not available for R version 3.5.1. That plugin is has not been updated to work with later releases of QIIME 2. Sign in [16] lifecycle0.2.0 stringr1.4.0 zlibbioc1.32.0 munsell0.5.0 gtable0.3.0 install.packages("BiocManager"), I get this error: 1. If you try loading the DEseq2 library now, that might work. Please read the posting I would recommend installing an older version of QIIME 2 for this plugin to work. Open Source Biology & Genetics Interest Group. Error: package or namespace load failed for DESeq2 in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. Hey, I tried your suggestion and it didn't work as it is but I did figure it out probably with the help of your suggestion. package in your R session. Find centralized, trusted content and collaborate around the technologies you use most. [1] SummarizedExperiment1.16.1 DelayedArray0.12.3 BiocParallel1.20.1 matrixStats0.56.0 Give up and run everything from the "permitted" library location (e.g. How should I deal with "package 'xxx' is not available (for R version x.y.z)" warning? The most common cause of this problem is trying to update a package while it is loaded in R (possibly in another process!). It could also be caused by a bad antivirus program that locks the dll which prevents it from being updated. You are doing something very wrong when installing your packages. How can we prove that the supernatural or paranormal doesn't exist? Solving environment: Found conflicts! When you load the package, you can observe this error. C:\Users\ASUS\AppData\Local\Temp\RtmpCiM0wL\downloaded_packages I'd take a look at need, to see if there are any insights to be had, so that you can correct the root problem rather than having to do this procedure with other packages. Running under: macOS Catalina 10.15.3, Matrix products: default Remember to always click on the red Show me the content on this page notice when navigating these older versions. CRAN: https://mirrors.sjtug.sjtu.edu.cn/cran/, Bioconductor version 3.12 (BiocManager 1.30.17), R 4.0.3 (2020-10-10), Old packages: 'cli', 'dplyr', 'igraph', 'MASS', 'ps', 'RSQLite', 'testthat', 'tibble', package locift is not available for Bioconductor version '3.12', A version of this package for your version of R might be available elsewhere,see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages. Is it suspicious or odd to stand by the gate of a GA airport watching the planes? How do you get out of a corner when plotting yourself into a corner, Identify those arcade games from a 1983 Brazilian music video. Well occasionally send you account related emails. Any other suggestion? Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. I even tried BiocManager::install("XML") but all failed as shown below. Why are physically impossible and logically impossible concepts considered separate in terms of probability? Checked that the channels are set in the correct order: Asking for help, clarification, or responding to other answers. I would like to install DESeq2 for DE analysis. in /Users/nikitavlasenko/miniconda3/envs/renv/lib/R/library/cluster/libs/cluster.so to your account. Can you provide a screen shot of the errors when you try to setup a new conda environment for QIIME 2? If it fails, required operating system facilities are missing. Maybe it is not a kind of quick fix and it could have been solved easier, but I was not able to. Thnaks anyway, Can't Load R DESeq2 Library, Installed All Missing Packages and Still Have Problems, How Intuit democratizes AI development across teams through reusability. [41] magrittr1.5 RCurl1.98-1.2 tibble3.0.3 Formula1.2-3 cluster2.1.0 Not the answer you're looking for? March 1, 2023, 7:31pm Error: package or namespace load failed for DESeq2: objects rowSums, colSums, rowMeans, colMeans are not exported by 'namespace:S4Vectors'. Platform: x86_64-w64-mingw32/x64 (64-bit) Now loading the DESeq2 library (Errors): Because I already installed >10 packages by hand I assume the solution is not to keep installing the missing packages because those packages will have more missing packages and more and more and I won't get out of this loop. Press CTRL-C to abort.failedUnsatisfiableError: The following specifications were foundto be incompatible with the existing python installation in your environment:Specifications: It also hung on the solving environment for over an hour. Referenced from: /Users/nikitavlasenko/miniconda3/envs/renv/lib/R/library/cluster/libs/cluster.so How do I align things in the following tabular environment? And finally, install the problem packages, perhaps also DESeq2. guide. Just to add on -- do you require an old version of Bioconductor for your current project? Bioconductor version 3.11 (BiocManager 1.30.10), R 4.0.1 (2020-06-06) * removing /Users/nikitavlasenko/miniconda3/envs/renv/lib/R/library/Hmisc Does ZnSO4 + H2 at high pressure reverses to Zn + H2SO4? [a/s/n]: Running install.packages("Hmisc") gives the first part of the error with missing cluster.so library. check that immediate dependencies are installed, but not that the dependencies of those, etc are installed. As far as I can tell, I have successfully installed the R package, but when I switch back to my Qiime environment to install Aldex2, I get an error. How do you ensure that a red herring doesn't violate Chekhov's gun? ERROR: dependency Hmisc is not available for package DESeq2 Euler: A baby on his lap, a cat on his back thats how he wrote his immortal works (origin?). Choose Yes. I tried the installation with biocLite again and was met with missing packages again (or the installation was ok and the when I tried loading the DESeq2 library I was met with missing packages errors, I don't remember) BUT!!! Feedback Is there anyone the same as mine error while loading library(DESeq2)? So, supposedly the issue is with Hmisc. [16] phyloseq1.30.0, loaded via a namespace (and not attached): a, There are binary versions available but the source versions are later: Loading required package: GenomicRanges This article explains how to resolve the package or namespace loading error. March 1, 2023, 4:56pm I am using the latest stable LAMMPS version (updated 17th Feb 2023) Also I am having troubles with the CMAKE unit testing, in particular for the force styles. Did any DOS compatibility layers exist for any UNIX-like systems before DOS started to become outmoded? Follow Up: struct sockaddr storage initialization by network format-string. Looking for incompatible packages.This can take several minutes. Is a PhD visitor considered as a visiting scholar? Fortunately I was able to solve it by doing things from several suggested solutions. [10] S4Vectors0.24.3 BiocGenerics0.32.0 reshape21.4.3 Use this. Traffic: 307 users visited in the last hour, https://cran.rstudio.com/src/contrib/htmlTable_2.1.0.tar.gz', https://wbc.upm.edu.my/cran/src/contrib/PACKAGES'. What is a word for the arcane equivalent of a monastery? If you didn't install Rstudio through conda, Rstudio may be using its own version of R that is bundled with Rstudio, instead of the one you've installed via conda. Just updated my previous R to 4.01 and now I cant load DESeq2. When you load the package, you can observe this error. Error: package or namespace load failed for 'DESeq2' in loadNamespace (j <- i [ [1L]], c (lib.loc, .libPaths ()), versionCheck = vI [ [j]]): there is no package called 'XML' so I would try to use BiocManager::install ("XML"). Did any DOS compatibility layers exist for any UNIX-like systems before DOS started to become outmoded? Please try the following steps: Quit all R/Rstudio sessions. Thanks for your suggestion. Content type 'application/zip' length 386703 bytes (377 KB) What am I doing wrong here in the PlotLegends specification? The issue here was likely that you used two different package managers (conda and R), each setting and managing their own paths. and then updating the packages that command indicates. now when I tried installing the missing packages manually (with install.packages("missingPackage")) they did install correctly. install.packages ("backport") You will be offered a choice to install v 1.1,10 from source. Retrying with flexible solve.Solving environment: Found conflicts! As such there are two solutions that may be more or less attainable given your own IT system. If you preorder a special airline meal (e.g. But I guess you have many problems with your installation, and I'd suggest BiocManager::valid () https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6: https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6/PACKAGES', https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6/htmlTable_2.0.1.zip', https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6/xfun_0.16.zip', https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6/XML_3.99-0.3.zip', User Agreement and Privacy trying URL 'https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6/htmlTable_2.0.1.zip' I tried running conda install -c bioconda bioconductor-deseq2 in a conda environment, but when I run R console and try to import DESeq2 I am getting the error message: Error: package or namespace load failed for GenomeInfoDb in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): Browse other questions tagged, Start here for a quick overview of the site, Detailed answers to any questions you might have, Discuss the workings and policies of this site. Is there a single-word adjective for "having exceptionally strong moral principles"? [7] edgeR_3.16.5 limma_3.30.12 + "htmlTable", "xfun" there is no package called data.table Content type 'application/zip' length 4255589 bytes (4.1 MB) [1] jsonlite1.6.1 splines3.6.3 foreach1.4.8 assertthat0.2.1 In addition: Warning message: [21] openxlsx4.1.4 rio0.5.16 tibble2.1.3 mgcv1.8-31 Why do many companies reject expired SSL certificates as bugs in bug bounties? Also note, however, that the error you got has been associated in the past with mirror outages. Your best bet would be to download the package source code and change the R version and install manually if you wanted the most recent version of locfit to install on your computer. Installing package(s) 'XML' To learn more, see our tips on writing great answers. Expected in: /usr/lib/libSystem.B.dylib, /Library/Frameworks/R.framework/Resources/bin/INSTALL: line 34: 9542 Done echo 'tools:::.install_packages()' Finally After 3-4 manual installations of missing packages everything worked. [29] crayon1.3.4 readxl1.3.1 nlme3.1-145 MASS7.3-51.5 The nature of simulating nature: A Q&A with IBM Quantum researcher Dr. Jamie We've added a "Necessary cookies only" option to the cookie consent popup. When you install and load some libraries in a notebook cell, like: While a notebook is attached to a cluster, the R namespace cannot be refreshed. To learn more, see our tips on writing great answers. This sort of problems almost always comes from a bug in R on Windows: If you reinstall a package that includes compiled code, and if that package is already loaded in R, the DLL will not get updated. [46] crayon1.3.4 pkgconfig2.0.3 ellipsis0.3.1 Matrix1.2-18 data.table1.13.0 Idk, but the issue came up from using installations from within R/Rstudio, and maybe it will never happen if we use just, @NikitaVlasenko you should be able to point Rstudio to the, We've added a "Necessary cookies only" option to the cookie consent popup, DESeqDataSetFromTximport invalid rownames length, deseq2 model design : Different gene output, deseq2 single factor design output interpretation. [31] tools_3.3.2 bitops_1.0-6 magrittr_1.5 biocLite(), install.packages() (and the devtools equivalent?) Installing package(s) 'htmlTable', 'xfun' [10] RColorBrewer_1.1-2 plyr_1.8.4 stringr_1.2.0 I have been working on installing Aldex2 (@dgiguer) in my Qiime environment using Ubuntu. So, I recommend following the install instructions for the respective versions of QIIME 2, and then install the plugin. [13] colorspace1.4-1 Matrix1.2-18 plyr1.8.6 pkgconfig2.0.3 [33] forcats0.5.0 foreign0.8-76 vegan2.5-6 tools3.6.3 in your system, start R and enter: Follow sessionInfo() Update all/some/none? Sometimes packages get loaded automatically at startup from .RProfile and you can check this by calling sessionInfo() after starting up. Use MathJax to format equations. Expected in: /usr/lib/libSystem.B.dylib, dyld: Symbol not found: _utimensat No error messages are returned. We've tried this - and can replicate this issue on a completely new install with no existing package installs. Acidity of alcohols and basicity of amines. While a notebook is attached to a cluster, the R namespace cannot be refreshed. [1] locfit_1.5-9.1 splines_3.3.2 lattice_0.20-34 C:\R\R-3.4.3\library). /var/folders/0t/8jm6lgqs0qj63rprpf9q_nfw0000gn/T//RtmpMNoZz3/downloaded_packages sessionInfo() Thanks for contributing an answer to Stack Overflow! Whats the grammar of "For those whose stories they are"? now when I tried installing the missing packages they did install. Is a PhD visitor considered as a visiting scholar? Glad everything is finally working now. Open source scripts, reports, and preprints for in vitro biology, genetics, bioinformatics, crispr, and other biotech applications. library(DESeq2) [7] GenomicRanges1.38.0 GenomeInfoDb1.22.0 IRanges2.20.2 I highly recommend that any R/RStudio version not installed inside conda be removed. :), BiocManager::install("locift") Error: package or namespace load failed for 'olsrr' in loadNamespace (j <- i [ [1L]], c (lib.loc, .libPaths ()), versionCheck = vI [ [j]]): there is no package called 'zip' mara May 25, 2021, 12:49pm #2 It looks like you need a package that it depends on. Policy. Please remember to confirm an answer once you've received one. but when I go to load the libraries I get this error: Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : I noticed that you are trying to install qiime2-2019.4, this may not work as ALDEx2 was made for qiime2-2019.7 as outlined here, up to and including the versions I mentioned earlier. I guess that means we can finally close this issue. Are you sure the R you're running from the command line is installed through Anaconda as well? This is the same answer I wrote in a comment to Hack-R I just wanted to post a separate answer: What I did was - uninstalled everything (RTools then RStudio thenR and also I deleted the R directory because it still had all the previous libraries) I did this in order to eliminate any chance that something was corrupt. Error: package or namespace load failed for 'GenomeInfoDb' in loadNamespace (i, c (lib.loc, .libPaths ()), versionCheck = vI [ [i]]): there is no package called 'GenomeInfoDbData' Error: package 'GenomeInfoDb' could not be loaded When I try installing GenomeInfoDbData and GenomeInfoDb using conda, it says that the packages were already installed. I just figured Id ask. "4.2") and enter: For older versions of R, please refer to the appropriate The package has place the R version constraint. Thanks for contributing an answer to Stack Overflow! Is the God of a monotheism necessarily omnipotent? I tried again and again was met with missing packages BUT!!! I want to import DESeq2 in Rstudio though and it is giving me a different error when I try importing DESeq2: Error in library("DESeq2") : there is no package called DESeq2. [5] IRanges_2.8.1 S4Vectors_0.12.1 Please try reinstalling rlang on a fresh session. 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